species:   Scscl
pid:       PID1683
parent:    Ssc-milR-159
paralog:   
locus:     NW_001820830.1:1733927-1734020
matures:   ['CGGUUUGGUCAGUUGCCUUCU', 'AUACGGCCACGGGCGAAUCGCUUCAAA']
srr:       SRR12527898
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram NW_001820830.1:1733927-1734020

4 out of bounds
10 alignments
2 proper strand
2 stranded perfect matches

                       ***************************   ***********************                  
CAAUCCGGCUUUGGGAUACGGCCACGGGCGAAUCGCUUCAAACGCUCAUGGGUCAUGCGGGUUCGGUUUGGUCAGUUGCCUUCUCACCAGAUGG
..(((.((...(((((...(((.((((.(((((((.....(((.(.((((...)))).).)))))))))).)).)).))).))))))).)))..
---------------------------------------------------------------CGGUUUGGUCAGUUGCCUUCU---------- l=21 a=0 c
---------------AUACGGCCACGGGCGAAUCGCUUCAAA---------------------------------------------------- l=27 a=0 c*
-------------------------------------------------------UGCGGGUUCGGUUUGGUCAGU------------------ l=21 a=1 ma
-------------------------GGGCGAAUCGCUUCAAACGCUCAUG-------------------------------------------- l=25 a=0 ma*

-------------------------------------------------------UGCGGGUUCGGUUUGGUCAGU------------------ l=21 a=1 (ma)
---UCCGGCUUUGGGAUACGGCCACG-------------------------------------------------------------------- l=23 a=1 

mb-01111
ax-1001011
ku-01
ss-110110001000
fn-001
